SNPs for thornback ray Raja clavata used for identifying sex-linked SNPs and carrying out sex assignment
We genotyped 1680 thornback ray Raja clavata sampled in the Bay of Biscay using a DNA chip described in Le Cam et al. (2019). After quality control 4604 SNPs were retained for identifying potential sex-linked SNPs using three methods: i) identification of excess of heterozygotes in one sex, ii) FST outlier analysis between the two sexes and iii) neuronal net modelling. Genotype coding: 0 homozygous for major allele, 1 heterozygous, 2 homozygous for minor allele. Flanking DNA sequences of SNPs identified with methods i) and ii) are also provided.
Données et ressources
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Genotype data for individuals - 218 MBCSV Ouvrir
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Flanking sequences for putative sex-linked SNPs - 4 KBCSV Ouvrir
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Informations supplémentaires
| Date (publication) | 2020-01-01 |
|---|---|
| Date (revision) | 2022-01-28 |
| Statut | onGoing |
| Fréquence de mise à jour | asNeeded |
| Langue des métadonnées | en |
| Licence | CC-BY-NC-SA (Creative Commons - Attribution, No commercial usage, Sharing under the same conditions) |
| Métadonnées sources | ISO 19115 XML |
| Dernière mise à jour | 2026-11-04 |
| Créé | 2026-11-04 |
| API | package_show |