Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array

Four experimental backcross full-sib families (378, 454, 291 and 211 individuals) were produced by in vitro fertilization at Ifremer (Palavas-les-Flots, France). All 1334 individuals were genotyped with a ThermoFisher AxiomTM Sea Bass 57k SNP DlabChip at the genotyping platform Gentyane (INRAE, Clermont-Ferrand, France). SNP calling was done using ThermoFisher software AxiomAnalysisSuiteTM. Preliminary quality controls were applied with threshold values of 95% for SNP call rate and 90% for sample call rate.

Données et ressources

Quality controlled data

BED (PLINK binary biallelic genotype table) file for backcross families genotypes - 15 MB

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Quality controlled data

BIM (PLINK extended MAP file) file for backcross families genotypes - 1 MB

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Quality controlled data

FAM (PLINK sample information file) file for backcross families genotypes - 34 KB

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DOI of the product

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Seanoe

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Informations supplémentaires

Date (publication)	2020-01-01
Date (revision)	2021-05-12
Statut	onGoing
Fréquence de mise à jour	asNeeded
Langue des métadonnées	en
Licence	CC0 (Creative Commons - Transfer into public domain)
Métadonnées sources	ISO 19115 XML
Dernière mise à jour	2026-11-04
Créé	2026-11-04
API	package_show