ABYSS bioinformatic pipeline comparisons
The ABYSS project aims at describing deep-sea benthic biodiversity spanning several branches of the tree of life with eDNA metabarcoding tools. To accommodate both micro- and macro biologists, we designed a bioinformatic pipeline based on Illumina read correction with Dada2 allowing analysing metabarcodes from prokaryotic and eukaryotic life compartments.
Data and resources
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HTML Open
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DOI du jeu de donnéeHTML Open
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Download linkHTML Open
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Miriam I. Brandt, Blandine Trouche, Laure Quintric, Patrick Wincker, Julie Poulain, Sophie Arnaud-Haond (2019). A flexible pipeline combining bioinformatic…HTML Open
Additional information
| Temporal extent | 2015-02-01 – 2020-12-31 |
|---|---|
| Date (publication) | 2019-08-02 |
| Status | onGoing |
| Update frequency | asNeeded |
| Metadata language | en |
| License | Donnée en accès restreint |
| Source metadata | ISO 19115 XML |
| Last updated | 2026-11-04 |
| Created | 2026-11-04 |
| API | package_show |