Data and scripts: Genetic recapture of Holothuria whitmaei on Lizard island
Genetic data and ecological data and R scripts for publication: "Uthicke, S, Gomez Cabrera, M, Byrne, M, Purcell, S. 2026. Extreme longevity revealed by 24-year genetic mark–recapture challenges conservation of endangered sea cucumbers. iScience"
2 data sets and 6 R scripts.
Data: 1) vcf file produced by AGRF bioinformaticists, based on sequencing data deposited at:
Sequencing was performed on 10B 300 cycle lanes on the Illumina NovaSeq X platform, yielding 150 bp paired end reads.
Initial bioinformatics was conducted at AGRF using the DeNovoGBS function from NGSEP Version 4.2.0 (07/01/2022) 56 resulting in a vcf file with 224,347 SNPs.
Raw sequence data are available at NCBI National Library of Medicine (Biosample accession numbers SAMN60877514- SAMN60877674)
- size of weight measurements of holothrurians at three points in time
Data and resources
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R-script Size comparison and t-testHTML Open
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R-script Survival Mortality and bootstrap calculationsHTML Open
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genotype file supplied by AGRF vcf file size: 1.38 GBtext/x-vcard Open
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R-script - Filters data, produces input for second genetic scriptHTML Open
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R-script - Produces supplementary FigureHTML Open
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R Script: Produces Fig. 3 in manuscriptHTML Open
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R-script - Produces Fig. 1 and Fig. 2HTML Open
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Size data - Input file for scriptCSV Open
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audio/basic Open
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audio/basic Open
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audio/basic Open
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audio/basic Open
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License GraphicPNG Open
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HTML Open
Additional information
| Date (revision) | 2026-10-24 |
|---|---|
| Status | onGoing |
| Update frequency | irregular |
| Metadata language | en |
| License | Creative Commons Attribution 4.0 |
| Source metadata | ISO 19115 XML |
| Last updated | 2026-11-05 |
| Created | 2026-11-05 |
| API | package_show |