Genomics data of a wild-type and a domesticated strains of the microalga Tisochrysis lutea and transposable elements annotation (v2) of the reference genome assembly
Microalgal domestication is an expanding research field that aims to multiply and accelerate the potential of microalgae for various biotechnological purposes. We investigated the stability of improved lipid traits and genetic change of a domesticated strain of the haptophyte Tisochrysis lutea, TisoS2M2, previously obtained by a mutation-selection improvement program. from the native wild-type stain TisoArg. We explored the genetic changes of the domesticated strain compared to the native strain by focusing on the dynamics of transposable elements by generating an improved TE annotation (v2) and generating Illumina and Oxford Nanopore sequencing technologies. The new TE annotation v2 is based on the genome assembly v2: https://doi.org/10.17882/52231 .
Data and resources
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Transposabe elements in T-lutea - 1 MBHTML Open
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Annotation of transposable elements in genome-v2 of T-lutea - 5 MBHTML Open
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Ilumina raw data sequencing (paired-end 150b) of T. lutea strain S2M2 - 2 GBZIP Open
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Ilumina raw data sequencing (paired-end 150b) of T. lutea Argenton wild type strain - 2 GBZIP Open
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ONT raw data sequencing of T. lutea strain S2M2 - 644 MBZIP Open
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ONT raw data sequencing of T. lutea Argenton wild type strain - 322 MBZIP Open
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Additional information
| Date (publication) | 2019-01-01 |
|---|---|
| Date (revision) | 2023-05-10 |
| Status | onGoing |
| Update frequency | asNeeded |
| Metadata language | en |
| License | CC-BY (Creative Commons - Attribution) |
| Source metadata | ISO 19115 XML |
| Last updated | 2026-11-04 |
| Created | 2026-11-04 |
| API | package_show |