Datasets
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23 datasets found
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Metagenomes of vent-peripheral sponges (Batch 1)
IfremerThese metagenomes were sequenced as part of the postdoctoral fellowship of Magdalena GEORGIEVA, part of the Laboratoire de Microbiologie des Environnements Extrêmes during 2021-2022. This work was supervised by Marie-Anne CAMBON-BONAVITA.
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Coûts de l'abattement microbiologique au sein des systèmes d'assainissement collectif et non collectif
IfremerFichier présentant les données d'origine et la méthode de détermination des coûts inhérents à l'abattement de la microbiologie mis en place dans les systèmes d'assainissement collectif et non collectif recensés en zones sensibles au sein d'une bande littorale…
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Metagenomic analysis of clams from Sanaga river in Cameroon
IfremerMetagenomic analysis of clams from Sanaga river in Cameroon to describe the virome
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DNA marker sequences of vibrio bacteria sampled from oysters and seawater in Thau lagoon (2015, France)
IfremerVibrio bacteria sampled from juvenile oysters and seawater collected in Thau Lagoon (Languedoc-Roussillon, France) in October 2015 during a mortality event were genotyped using hsp60, rctB, topA and mreB protein-coding genes
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DCSMM2024_D9C2 Qualité microbiologique des eaux de baignade entre 2015 et 2020
IfremerSurveillance microbiologique nationale se basant sur 4 axes : surveillance des contaminants microbiologique dans les coquillages issus des zones de productions professionnelles, surveillance de ceux issus des zones de pêche à pied de loisir, surveillance de la…
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Arrêtés préféctoraux déclarant la qualité microbiologique des zones de production de coquillages entre 2015 et 2020
IfremerLes préfets de chaque territoire définissent par arrêté préfectoral le classement des zones conchylicoles pour l’année N sur la base de la qualité REMI de l’année N-1 mais aussi de critères de qualité chimique suivis et évalués par le Réseau d’Observation de…
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Antarctic Circumnavigation Expedition ecogenomics - METAGENOMES
IfremerFastq files from illumina sequencing of samples taken by a capsule coupled to rosette CTD probes at different depths (5-1000m) and using different size filters (from 0.22 to 3µM; greater than 3µM). Sequencing was carried out on the genoscope using the same…
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ABYSS bioinformatic pipeline comparisons
IfremerThe ABYSS project aims at describing deep-sea benthic biodiversity spanning several branches of the tree of life with eDNA metabarcoding tools. To accommodate both micro- and macro biologists, we designed a bioinformatic pipeline based on Illumina read…
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16S sanger sequencing data for caracterisation of bacteria strains for MOSARDEF 2022 project
IfremerSéquences partielles de l'ADNr 16s de souches bactériennes de référence ou collectées sur des huîtres. Acquises par séquençage Sanger.
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Observatoire microbien en rade de Brest et mer d'Iroise
IfremerCet observatoire a pour but d'étudier la dynamique des communautés et groupes fonctionnels microbiens (bactéries et archées) pélagiques, présents au niveau du front de Ouessant en mer d'Iroise (campagnes M2BiPAT) et de la station SOMLIT en rade de Brest.
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Input of microbial pathogens along European coastlines, Jan. 2020
IfremerThis raster dataset represents the input of microbial pathogens along the European coastlines. The pressure layer was created using three different datasets rasterized using the EEA 10 km grid: urban agglomerations reported under the Urban Waste Water…
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DCSMM2024_D9C2 Qualité microbiologique des zones de pêche à pied de loisir entre 2015 et 2020
IfremerSurveillance microbiologique nationale se basant sur 4 axes : surveillance des contaminants microbiologique dans les coquillages issus des zones de productions professionnelles, surveillance de ceux issus des zones de pêche à pied de loisir, surveillance de la…
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SHARK - National and regional marine environmental monitoring of Picoplankton in Sweden since 2002
European Marine Observation and Data Network (EMODnet)The national monitoring program was initiated by the Swedish Environmental Protection Agency and is now financed by the Swedish Agency for Marine and Water Management. Monitoring is performed by Swedish Meteorological and Hydrological Institute and Umeå…
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A*MIDEX CHROME: Western Mediterranean automated flow cytometry surface sample from Ships of O/P crossing Tunis-Marseille and Tunis-Genova between October 2016-January 2017
European Marine Observation and Data Network (EMODnet)Phytoplankton functional diversity and spatio-temporal distribution at the meso-scale are studied in the frame of the AMIDEX CHROME (Continuous High Resolution Observation of the Mediterranean, https://en-chrome.mio.univ-amu.fr/?pageid=42) project thanks to…
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Données par paramètre - Thème Microbiologie
IfremerLe produit Surval « Données par paramètre » met à disposition les données d'observation et de surveillance bancarisées dans Quadrige pour le thème "Microbiologie". Quadrige bancarise des données de description de l’environnement marin et de la ressource…
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Picoplankton Adriatic-SESAME Project
European Marine Observation and Data Network (EMODnet)Bacteria non taxonomy-related data collected in the Adriatic and Ionian Sea within SESAME Project during the cruises: SESAME-IT1, SESAME-IT6 and SESAME-IT7.
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MAP-IO (Marion Dusfresne Atmospheric Program - Indian Ocean) flow cytometry_part2
IfremerThe MAP-IO (Marion Dusfresne Atmospheric Program - Indian Ocean) program aims to address the lack of observations in this region of the Earth by equipping the Marion Dufresne vessel (https://taaf.fr/en/marion-dufresne-and-astrolabe/) with a set of in-situ…
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MAP-IO (Marion Dusfresne Atmospheric Program - Indian Ocean) flow cytometry
IfremerThe MAP-IO (Marion Dusfresne Atmospheric Program - Indian Ocean) program aims to make up for the lack of observation in this region of the earth by equipping the Marion Dufresne vessel (https://taaf.fr/en/marion-dufresne-and-astrolabe/) with a set of in-situ…
Phytoplankton biomass and diversityMicrobe biomass and diversity HTML -
.Synthesis of LMI TAPIOCA Datasets from the Tropical Atlantic Ocean
IfremerThis GeoPackage provides a summary of the metadata associated with all datasets available in the LMI TAPIOCA Sextant catalogue. It allows users to explore the datasets through an interactive map and to apply filters for easier data discovery. The associated…
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MAP-IO (Marion Dusfresne Atmospheric Program - Indian Ocean) flow cytometry_part2
European Marine Observation and Data Network (EMODnet)The MAP-IO (Marion Dusfresne Atmospheric Program - Indian Ocean) program aims to address the lack of observations in this region of the Earth by equipping the Marion Dufresne vessel (https://taaf.fr/en/marion-dufresne-and-astrolabe/) with a set of in-situ…
Phytoplankton biomass and diversityMicrobe biomass and diversity HTML